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(d) Draw a plot of label signal versus log[testosterone] that would be expected in this type of assay. 5. Biotin de ciency results from a number of inborn errors of metabolism, and biotin quantitation therefore represents a general screening method for these diseases. Recently, a new method was proposed for biotin quantitation in serum. The method has been called an ELLSA, and relies on the following competitive reaction: Biotins Biotinf Avidin-E Biotins : Avidin-E Biotinf : Avidin-E ! where Biotins and Biotinf are the adsorbed and free (analyte) forms of biotin, respectively, Avidin-E is an Avidin alkaline phosphatase conjugate that is added in limited quantity. Following an incubation period, reagents not bound to the microtiter plates are rinsed away, and the remaining enzyme activity is quantitated using a xed time method after the addition of excess substrate. (a) Sketch the plot of enzyme activity versus log[Biotinf] that would be expected for this type of assay. (b) A synthetic substrate (I, below) was used for enzyme activity measurements. This substrate undergoes dephosphorylation in the presence of alkaline phosphatase to yield an unstable intermediate (II) that decomposes in a chemiluminescent reaction (Eq. 6.22):

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14

for the purpose of a health check. Think of this as the nullproc equivalent for databases; you may want to use the internal statistics tables of the database, since you know you ll be testing something that resides deep inside the database engine. If you re using raw disks for the database, there s not much benefit on your insistence that the test actually tickle the disk. Without a layer of filesystem and other kernel code between the database and the disk, you can rely on the disk management subsystem to recognize and repair disk failures. Checking the database health using an in-memory table is sufficient in most cases. Of course, if you re using a database on top of a filesystem, you may want to go through the whole database-to-disk path to be sure the filesystem internals aren t causing problems.

6:22

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Preserving the ACID properties of a transactional system requires more work on recovery. It s also not completely invisible to clients connected to the system, as we ll see shortly. When the primary database server fails, the secondary does a cold start of the database, either as a second instance in a symmetric configuration or as a new database instance in a master/slave setup. The first order of business is to get the disk sets from the primary to the secondary, just as in an NFS server takeover. If you re using raw disks for the database, the disk consistency check will happen at the database level, so the failover system just has to move ownership of the disk sets. When the database gets layered on a filesystem, however, you have the same recovery time headache inherent in an NFS server namely, checking the filesystems for consistency. The database will still have to confirm that its data structures and transactions are clean, so this data storage consistency check only gets you partway there.

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If the Km of alkaline phosphatase for compound I is 0.10 mM, what concentration of this substrate should be used for the enzyme activity determination (c) Show the plot of light intensity versus time that would be obtained by the continuous measurement of light emitted in a control well, where no free biotin had been added to the reaction mixture. How does this differ from a typical absorbance versus time plot that would be obtained if the substrate yielded a colored (absorbing) product 6. In a heterogeneous sandwich immunoassay employing uorescence excitation transfer (Eq. 6.7 and Fig. 6.6), draw the plots of emission intensity versus log[Ag] that would be expected if emission from (a) F1 and (b) F2 were measured.

Should you run your database on raw disks or cooked filesystems This is the tastes great versus less filling debate of the digerati. (Although some database products have a definite preference for one or the other, most database applications run adequately in either environment.) This was the issue that caused the most debate and discussion between your two authors. Hal, taking the less filling argument, prefers raw disks for their ease and surety of recovery, and their enhanced performance. Evan takes the tastes great position and prefers filesystem-based databases for their ease in backups, the ease in restoring a single filesystem from tape, and for all of the features that modern filesystems can deliver.

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